Comments:
It is coming along nicely, and I like the changes you have made so far! Below are some glitches I encountered.
Glitches Encountered: (POSSIBLE SPOILERS)
Cannot copy previous saved games from the old version into new game. It does give the option to "Resume" game, but it experiences an error with a missing file. Not really unexpected, just unfortunate. Granted, given how early one is in the game, it is not that difficult to replay.
Is the first save point supposed to work? The one that states objects that look like it are save points? If it is supposed to work, it did not work for me. The other save point in the intersection before CapsLock did work.
When using Bottled Energy in combat, the character select to use the item does not show up; this is only an issue when multiple characters are in the party to have to choose which character to use the item on.
When I fought Bios the second time, Talon's image is too large, seeing only the upper left of his helmet. You'll want to resize the image to fit.
When CapsLock is talking prior to the second fight, you'll want tot change "your" to "you're".
After fighting and losing against CapsLock, and the green/corrupted program shows up to save Talon, I could not interact with the green/corrupted program. Even if I am not supposed to be able to talk with him, you might want to include a speech bubble with a " . . . ". If this is what you were talking about with the speech being missing that your brother is working on, then you are aware of the issue.
End of glitches
I think that's it or now, since I didn't play further than that as yet.